Huh. I only just saw this. Here's my votes

Rule 001: Drowning for Health Purposes Yay.
Rule 002: My Thesis: More Complex Is Easier Nay.
Rule 003: Bonus Legacy Class Levels Nay.
Rule 004: Superior Unarmed Strike Yay.
Rule 005: Dead is Dead Nay.
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A dead character is rendered unplayable until returned to life or retired from the game. Such a character can take no actions (including free actions).
Emphasis added. As written, it would preclude liches, ghosts, necropolitans, Risen Martyrs, etc. It would be better if it were just the second sentence. It might also be wise to add something like "A dead creature is completely unaware of its surroundings," since reactive Spot and Listen checks aren't actions.

Rule 006: Using What Comes Naturally Yay.
Rule 007: Wolves with Hooves Nay.
Rule 008: Dragonblood and heritage Nay.
Rule 010: Who's Charging, Anyways? Nay.
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As pointed out, this wreaks havoc with pounce.

Rule 011: Who's Riding By, Anyways? Nay.
Rule 012: Anything can be Armor Yay.
Rule 013: Clarifying the Dragon Disciple Paradox Yay.
Rule 014: I'm Not Left Handed Yay.
Rule 0xx: My Weapon is My Shield! Yay.
Rule 0xx: Animate Alignment Debate Nay.
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While I think this is a reasonable house rule, it's still a house rule.

Rule 0xx: Death Watches no Evil Yay.
Rule 0xx: Positive Drawbacks to Undead Nay.
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A perfectly reasonable house rule, but still a house rule.

Rule 0xx: Enchanting Enhanced Projectiles Nay.
Rule 0xx: Swordsaging in Leather or No Yay.