It's interesting that you bring up the other uses of "wherefore". Even with the word appearing multiple times in the play, let me try to illustrate why so many people make the mistake of translating "wherefore" as "where".
Here're the original lines:
Originally Posted by William Shakespeare
Here's a modern translation:
Originally Posted by Translation
And now we have people mistaking "wherefore" for "where":
See why the issue occurs? Every single time "wherefore" is used, "where" can be substituted and the line makes just as much sense. Only line #3 sounds strange, but even then, it can be explained away as emphasis.Originally Posted by Incorrect translation
So it really isn't that unreasonable for people to conclude that "wherefore" means "where".