Opposed rolls, and it works quite well.
Easy.
Depends on what secret agent is / what you want to do. If you're only interested in hacking, then just taking some ranks in Technology would be sufficient; if you want to be able to hack anything instantly, Machine Control would be more appropriate. If Secret Agent is a class and is supposed to make you like James Bond, then this could be achieved with some ranks in Tech, Vehicles, Covert, Charm, Streetwise, possibly Command, and the rest would just be mundane gear; you likely wouldn't even need any powers.