I suppose I could try to add a note regarding that to the Monk section, since I have nerfed both Mage Armor and Shield (by a mere -1 or 2 each but oh boy did people rage in the thread where I brought it up), and Animated Shields are mega-banned for violating the entire concept of shields. Wording the Monk's AC bonus to explicitly never stack with any sort of armor or AC bonus is easy enough, I don't recall if I avoided doing so to keep it short, or because I thought that was a bit extreme and wanted to allow some cross-play.
As for Monk+Polymorph, I'd put that under Polymorph problems to deal with as needed. I'm entirely cool with ruling that your humanoid kung-fu does not in fact work in bodies outside of your own, the fact that it doesn't is really a massive oversight (for that matter, another option would be shutting down feats!). I can add that to the Polymorph section.